Some states, usually the more populous ones, have their saftey crusaders that see the Atom and other custom minimalist vehicles as a liability. They personally do not consider the car safe and they apply their beliefs to their jobs, right, wrong or otherwise. Other states have strict rules regulating equipment like windshields/wipers/signals/bumpers/fenders/emissions etc. that are inconvenient when applied to Atoms which might not meet the strictest definition on some equipment.
The DMV manager that processed me was hesitant at first, though she was interested in such a different-looking car, and I had to schedule an appointment with a State DPS trooper (who was equally interested) to sign off on all the State's minimum safety equipment before the DMV manager felt confident that she'd not get in trouble for allowing such a different car legally on the road. The only potential hiccup with me what that there was no windshield. There's a law regarding motorcycles and the use of eye protection in lieu of a windscreen. I had my full faced helmet on their counter and said that I had that covered. Voila! No problem.
So in general, it helps to be congenial and forthcoming on info and to campus the office you intend to use for registration. Anything to grease the skids.
There have been instances where someone was declined registration and that person said, "But there's this other guy, Joe Smith, that was accepted." which was some nefarious revelation to the state officials and Joe Smiths' registration was revoked. That's why some people are tight-lipped about how they got their cars legal. A negative precedent was set and other people don't want to be victims of other people dropping names.
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